Cooperative development of logical modelling standards and tools with CoLoMoTo.

Details

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It was possible to publish this article open access thanks to a Swiss National Licence with the publisher.
Serval ID
serval:BIB_918E26626992
Type
Article: article from journal or magazin.
Publication sub-type
Review (review): journal as complete as possible of one specific subject, written based on exhaustive analyses from published work.
Collection
Publications
Institution
Title
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Journal
Bioinformatics
Author(s)
Naldi A., Monteiro P.T., Müssel C., Tools , Kestler H.A., Kestler H.A., Thieffry D., Xenarios I., Saez-Rodriguez J., Helikar T., Chaouiya C.
Working group(s)
Consortium for Logical Models
Contributor(s)
Tools , Albert R., Barberis M., Calzone L., Chaouiya C., Chasapi A., Cokelaer T., Crespo I., Dorier J., Dräger A., Helikar T., Hernandez C., Hucka M., de Jong H., Keating SM., Kestler HA., Klamt S., Klarner H., Laubenbacher R., Novère NL., Monteiro PT., Müssel C., Naldi A., Niknejad A., Rodriguez N., Saez-Rodriguez J., Siebert H., Stoll G., Thieffry D., Xenarios I., Zañudo JG.
ISSN
1367-4811 (Electronic)
ISSN-L
1367-4803
Publication state
Published
Issued date
2015
Peer-reviewed
Oui
Volume
31
Number
7
Pages
1154-1159
Language
english
Abstract
The identification of large regulatory and signalling networks involved in the control of crucial cellular processes calls for proper modelling approaches. Indeed, models can help elucidate properties of these networks, understand their behaviour and provide (testable) predictions by performing in silico experiments. In this context, qualitative, logical frameworks have emerged as relevant approaches, as demonstrated by a growing number of published models, along with new methodologies and software tools. This productive activity now requires a concerted effort to ensure model reusability and interoperability between tools. Following an outline of the logical modelling framework, we present the most important achievements of the Consortium for Logical Models and Tools, along with future objectives. Our aim is to advertise this open community, which welcomes contributions from all researchers interested in logical modelling or in related mathematical and computational developments.
Keywords
Animals, Cells/metabolism, Computer Simulation, Humans, Metabolic Networks and Pathways, Models, Theoretical, Societies, Scientific, Software/standards, Systems Biology/methods
Pubmed
Open Access
Yes
Create date
07/08/2015 12:26
Last modification date
25/09/2019 7:10
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