JULIDE: a software tool for 3D reconstruction and statistical analysis of autoradiographic mouse brain sections.

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State: Public
Version: author
Serval ID
serval:BIB_46E0FF1EDB65
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
JULIDE: a software tool for 3D reconstruction and statistical analysis of autoradiographic mouse brain sections.
Journal
Plos One
Author(s)
Ribes D., Parafita J., Charrier R., Magara F., Magistretti P.J., Thiran J.P.
ISSN
1932-6203[electronic], 1932-6203[linking]
Publication state
Published
Issued date
2010
Peer-reviewed
Oui
Volume
5
Number
11
Pages
e14094
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: epublish
Abstract
In this article we introduce JULIDE, a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections. This software tool has been developed in the open-source ITK software framework and is freely available under a GPL license. The article presents the complete image processing chain from raw data acquisition to 3D statistical group analysis. Results of the group comparison in the context of a study on spatial learning are shown as an illustration of the data that can be obtained with this tool.
Pubmed
Open Access
Yes
Create date
23/12/2010 16:29
Last modification date
20/08/2019 14:52
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