Benchmarking various green fluorescent protein variants in Bacillus subtilis, Streptococcus pneumoniae, and Lactococcus lactis for live cell imaging.

Details

Serval ID
serval:BIB_31E48788E5EC
Type
Article: article from journal or magazin.
Collection
Publications
Title
Benchmarking various green fluorescent protein variants in Bacillus subtilis, Streptococcus pneumoniae, and Lactococcus lactis for live cell imaging.
Journal
Applied and Environmental Microbiology
Author(s)
Overkamp W., Beilharz K., Detert Oude Weme R., Solopova A., Karsens H., Kovács Á., Kok J., Kuipers O.P., Veening J.W.
ISSN
1098-5336 (Electronic)
ISSN-L
0099-2240
Publication state
Published
Issued date
2013
Volume
79
Number
20
Pages
6481-6490
Language
english
Abstract
Green fluorescent protein (GFP) offers efficient ways of visualizing promoter activity and protein localization in vivo, and many different variants are currently available to study bacterial cell biology. Which of these variants is best suited for a certain bacterial strain, goal, or experimental condition is not clear. Here, we have designed and constructed two "superfolder" GFPs with codon adaptation specifically for Bacillus subtilis and Streptococcus pneumoniae and have benchmarked them against five other previously available variants of GFP in B. subtilis, S. pneumoniae, and Lactococcus lactis, using promoter-gfp fusions. Surprisingly, the best-performing GFP under our experimental conditions in B. subtilis was the one codon optimized for S. pneumoniae and vice versa. The data and tools described in this study will be useful for cell biology studies in low-GC-rich Gram-positive bacteria.
Keywords
Bacillus subtilis/chemistry, Bacillus subtilis/genetics, Benchmarking, DNA, Bacterial/chemistry, DNA, Bacterial/genetics, Green Fluorescent Proteins/analysis, Green Fluorescent Proteins/genetics, Lactococcus lactis/chemistry, Lactococcus lactis/genetics, Microscopy, Fluorescence/methods, Molecular Sequence Data, Sequence Analysis, DNA, Staining and Labeling/methods, Streptococcus pneumoniae/chemistry, Streptococcus pneumoniae/genetics
Pubmed
Web of science
Open Access
Yes
Create date
11/10/2016 16:32
Last modification date
20/08/2019 14:17
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