Inter-varietal structural variation in grapevine genomes.

Details

Serval ID
serval:BIB_ECA973143A83
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Inter-varietal structural variation in grapevine genomes.
Journal
Plant Journal
Author(s)
Cardone M.F., D'Addabbo P., Alkan C., Bergamini C., Catacchio C.R., Anaclerio F., Chiatante G., Marra A., Giannuzzi G., Perniola R., Ventura M., Antonacci D.
ISSN
1365-313X (Electronic)
ISSN-L
0960-7412
Publication state
Published
Issued date
2016
Peer-reviewed
Oui
Volume
88
Number
4
Pages
648-661
Language
english
Abstract
Grapevine (Vitis vinifera L.) is one of the world's most important crop plants, which is of large economic value for fruit and wine production. There is much interest in identifying genomic variations and their functional effects on inter-varietal, phenotypic differences. Using an approach developed for the analysis of human and mammalian genomes, which combines high-throughput sequencing, array comparative genomic hybridization, fluorescent in situ hybridization and quantitative PCR, we created an inter-varietal atlas of structural variations and single nucleotide variants (SNVs) for the grapevine genome analyzing four economically and genetically relevant table grapevine varieties. We found 4.8 million SNVs and detected 8% of the grapevine genome to be affected by genomic variations. We identified more than 700 copy number variation (CNV) regions and more than 2000 genes subjected to CNV as potential candidates for phenotypic differences between varieties.

Keywords
Vitis vinifera L, table grape, high-throughput sequencing, genomic variation, copy number variation, single nucleotide polymorphism, SRP009057, candidate genes
Pubmed
Web of science
Create date
05/01/2017 10:16
Last modification date
20/08/2019 16:14
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