Wave packets analysis of two-dimensional protein maps: a new approach to study the diversity of immunoglobulins

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Serval ID
serval:BIB_BBE887ADC0B0
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Wave packets analysis of two-dimensional protein maps: a new approach to study the diversity of immunoglobulins
Journal
Applied and Theoretical Electrophoresis
Author(s)
Zahnd  A., Tissot  J. D., Hochstrasser  D. F.
ISSN
0954-6642 (Print)
Publication state
Published
Issued date
1993
Volume
3
Number
6
Pages
321-8
Notes
Comparative Study
Journal Article
Research Support, Non-U.S. Gov't
Abstract
This report describes a mathematical approach for classifying two-dimensional (2D)-protein maps without spot detection or pattern matching. Analysis of electrophoretograms was performed using wave packet decompositions of the signals. The scanned images were automatically decomposed into a set of sub-images organized in a tree structure. Each sub-image contained relevant information such as its energy, or entropy. Moreover the node position itself of the sub-image reflected a frequency localization. A distance was then defined using the tree repartition of these quantities. Finally a statistical clustering on the tree structures was performed, terminating with a classification of the images according to their repartition frequencies. The algorithm has been applied to classify immunoglobulin (Ig) light chain patterns and proved useful to automatically detect monoclonal, oligoclonal or polyclonal Igs.
Keywords
*Algorithms *Electrophoresis, Gel, Two-Dimensional Immunoglobulins/*analysis *Models, Statistical Peptide Mapping/*methods Signal Processing, Computer-Assisted
Pubmed
Create date
25/01/2008 16:34
Last modification date
20/08/2019 16:29
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