Progress in fold recognition.

Details

Serval ID
serval:BIB_641F9E03CBBC
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Progress in fold recognition.
Journal
Proteins
Author(s)
Flöckner H., Braxenthaler M., Lackner P., Jaritz M., Ortner M., Sippl M.J.
ISSN
0887-3585 (Print)
ISSN-L
0887-3585
Publication state
Published
Issued date
1995
Peer-reviewed
Oui
Volume
23
Number
3
Pages
376-386
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Abstract
The prediction experiment reveals that fold recognition has become a powerful tool in structural biology. We applied our fold recognition technique to 13 target sequences. In two cases, replication terminating protein and prosequence of subtilisin, the predicted structures are very similar to the experimentally determined folds. For the first time, in a public blind test, the unknown structures of proteins have been predicted ahead of experiment to an accuracy approaching molecular detail. In two other cases the approximate folds have been predicted correctly. According to the assessors there were 12 recognizable folds among the target proteins. In our postprediction analysis we find that in 7 cases our fold recognition technique is successful. In several of the remaining cases the predicted folds have interesting features in common with the experimental results. We present our procedure, discuss the results, and comment on several fundamental and technical problems encountered in fold recognition.
Keywords
Algorithms, Amino Acid Sequence, Bacterial Proteins, Computer Communication Networks, Computer Graphics, DNA-Binding Proteins/chemistry, Databases, Factual, Drosophila Proteins, Helminth Proteins, Models, Molecular, Molecular Sequence Data, Protein Conformation, Protein Folding, Protein Structure, Secondary, Proteins/chemistry, RNA-Binding Proteins/chemistry, Sequence Alignment, Software, Subtilisins/chemistry, Trypsin Inhibitors/chemistry, Xylan Endo-1,3-beta-Xylosidase, Xylosidases/chemistry
Pubmed
Web of science
Create date
25/01/2008 17:08
Last modification date
20/08/2019 15:20
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