Stability and structure of oligomers of the Alzheimer peptide Abeta16-22: from the dimer to the 32-mer.

Details

Serval ID
serval:BIB_4D9807BB0443
Type
Article: article from journal or magazin.
Collection
Publications
Title
Stability and structure of oligomers of the Alzheimer peptide Abeta16-22: from the dimer to the 32-mer.
Journal
Biophysical Journal
Author(s)
Röhrig U.F., Laio A., Tantalo N., Parrinello M., Petronzio R.
ISSN
0006-3495 (Print)
ISSN-L
0006-3495
Publication state
Published
Issued date
2006
Peer-reviewed
Oui
Volume
91
Number
9
Pages
3217-3229
Language
english
Notes
Corresponding Author: Röhrig, Ute F.
Abstract
Several neurodegenerative diseases such as Alzheimer's, Parkinson's, and Huntington's diseases are associated with amyloid fibrils formed by different polypeptides. We probe the structure and stability of oligomers of different sizes of the fragment Abeta(16-22) of the Alzheimer beta-amyloid peptide using atomic-detail molecular dynamics simulations with explicit solvent. We find that only large oligomers form a stable beta-sheet aggregate, the minimum nucleus size being of the order of 8-16 peptides. This effect is attributed to better hydrophobic contacts and a better shielding of backbone-backbone hydrogen bonds from the solvent in bigger assemblies. Moreover, the observed stability of beta-sheet aggregates with a different number of layers can be explained on the basis of their solvent-accessible surface area. Depending on the stacking interface between the sheets, we observe straight or twisted structures, which could be linked to the experimentally observed polymorphism of amyloid fibrils. To compare our 32-mer structure to experimental data, we calculate its x-ray diffraction pattern. Good agreement is found between experimentally and theoretically determined reflections, suggesting that our model indeed closely resembles the structures found in vitro.
Keywords
Amyloid beta-Peptides/chemistry, Computer Simulation, Dimerization, Drug Stability, Models, Chemical, Models, Molecular, Multiprotein Complexes/chemistry, Multiprotein Complexes/ultrastructure, Peptide Fragments/chemistry, Protein Conformation, Protein Denaturation
Pubmed
Web of science
Open Access
Yes
Create date
30/10/2015 10:12
Last modification date
20/08/2019 15:02
Usage data