The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.

Détails

Ressource 1Télécharger: 33037820_BIB_FD0CF4F734E7.pdf (2079.03 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_FD0CF4F734E7
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Périodique
Nucleic acids research
Auteur⸱e⸱s
Bastian F.B., Roux J., Niknejad A., Comte A., Fonseca Costa S.S., de Farias T.M., Moretti S., Parmentier G., Rech de Laval V., Rosikiewicz M., Wollbrett J., Echchiki A., Escoriza A., Gharib W.H., Gonzales-Porta M., Jarosz Y., Laurenczy B., Moret P., Person E., Roelli P., Sanjeev K., Seppey M., Robinson-Rechavi M.
ISSN
1362-4962 (Electronic)
ISSN-L
0305-1048
Statut éditorial
Publié
Date de publication
08/01/2021
Peer-reviewed
Oui
Volume
49
Numéro
D1
Pages
D831-D847
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: ppublish
Résumé
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). It is based exclusively on curated healthy wild-type expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Curation includes very large datasets such as GTEx (re-annotation of samples as 'healthy' or not) as well as many small ones. Data are integrated and made comparable between species thanks to consistent data annotation and processing, and to calls of presence/absence of expression, along with expression scores. As a result, Bgee is capable of detecting the conditions of expression of any single gene, accommodating any data type and species. Bgee provides several tools for analyses, allowing, e.g., automated comparisons of gene expression patterns within and between species, retrieval of the prefered conditions of expression of any gene, or enrichment analyses of conditions with expression of sets of genes. Bgee release 14.1 includes 29 animal species, and is available at https://bgee.org/ and through its Bioconductor R package BgeeDB.
Mots-clé
Genetics
Pubmed
Open Access
Oui
Financement(s)
Fonds national suisse / 31003A_133011
Fonds national suisse / 407540_167149
Fonds national suisse / 31003A_153341
Fonds national suisse / CRSII3_160723
Fonds national suisse / 31003A_173048
Création de la notice
31/05/2020 10:55
Dernière modification de la notice
20/12/2023 8:15
Données d'usage