Recurrent structural motifs in non-homologous protein structures.

Détails

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Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_FB91592FAE3A
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Recurrent structural motifs in non-homologous protein structures.
Périodique
International journal of molecular sciences
Auteur⸱e⸱s
Johansson M.U., Zoete V., Guex N.
ISSN
1422-0067 (Print)
ISSN-L
1422-0067
Statut éditorial
Publié
Date de publication
10/04/2013
Peer-reviewed
Oui
Volume
14
Numéro
4
Pages
7795-7814
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: epublish
Résumé
We have extracted an extensive collection of recurrent structural motifs (RSMs), which consist of sequentially non-contiguous structural motifs (4-6 residues), each of which appears with very similar conformation in three or more mutually unrelated protein structures. We find that the proteins in our set are covered to a substantial extent by the recurrent non-contiguous structural motifs, especially the helix and strand regions. Computational alanine scanning calculations indicate that the average folding free energy changes upon alanine mutation for most types of non-alanine residues are higher for amino acids that are present in recurrent structural motifs than for amino acids that are not. The non-alanine amino acids that are most common in the recurrent structural motifs, i.e., phenylalanine, isoleucine, leucine, valine and tyrosine and the less abundant methionine and tryptophan, have the largest folding free energy changes. This indicates that the recurrent structural motifs, as we define them, describe recurrent structural patterns that are important for protein stability. In view of their properties, such structural motifs are potentially useful for inter-residue contact prediction and protein structure refinement.
Mots-clé
Amino Acid Motifs, Amino Acid Substitution, Mutation, Missense, Protein Folding, Proteins/chemistry, Proteins/genetics, Sequence Analysis, Protein/methods
Pubmed
Web of science
Open Access
Oui
Création de la notice
05/02/2018 14:58
Dernière modification de la notice
30/04/2021 7:16
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