Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.

Détails

ID Serval
serval:BIB_CFABEDE09323
Type
Article: article d'un périodique ou d'un magazine.
Sous-type
Synthèse (review): revue aussi complète que possible des connaissances sur un sujet, rédigée à partir de l'analyse exhaustive des travaux publiés.
Collection
Publications
Institution
Titre
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Périodique
Briefings in bioinformatics
Auteur⸱e⸱s
Niarakis A., Kuiper M., Ostaszewski M., Malik Sheriff R.S., Casals-Casas C., Thieffry D., Freeman T.C., Thomas P., Touré V., Noël V., Stoll G., Saez-Rodriguez J., Naldi A., Oshurko E., Xenarios I., Soliman S., Chaouiya C., Helikar T., Calzone L.
ISSN
1477-4054 (Electronic)
ISSN-L
1467-5463
Statut éditorial
Publié
Date de publication
22/03/2021
Peer-reviewed
Oui
Volume
22
Numéro
2
Pages
1848-1859
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: ppublish
Résumé
The fast accumulation of biological data calls for their integration, analysis and exploitation through more systematic approaches. The generation of novel, relevant hypotheses from this enormous quantity of data remains challenging. Logical models have long been used to answer a variety of questions regarding the dynamical behaviours of regulatory networks. As the number of published logical models increases, there is a pressing need for systematic model annotation, referencing and curation in community-supported and standardised formats. This article summarises the key topics and future directions of a meeting entitled 'Annotation and curation of computational models in biology', organised as part of the 2019 [BC]2 conference. The purpose of the meeting was to develop and drive forward a plan towards the standardised annotation of logical models, review and connect various ongoing projects of experts from different communities involved in the modelling and annotation of molecular biological entities, interactions, pathways and models. This article defines a roadmap towards the annotation and curation of logical models, including milestones for best practices and minimum standard requirements.
Mots-clé
annotation standards, biocuration, logical modelling, model reusability, reproducibility
Pubmed
Web of science
Création de la notice
11/06/2021 18:42
Dernière modification de la notice
19/12/2023 8:15
Données d'usage