Identifying orthologs with OMA: A primer.

Détails

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Etat: Public
Version: de l'auteur⸱e
Licence: CC BY 4.0
ID Serval
serval:BIB_B7D7E8705809
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Identifying orthologs with OMA: A primer.
Périodique
F1000Research
Auteur⸱e⸱s
Zahn-Zabal M., Dessimoz C., Glover N.M.
ISSN
2046-1402 (Electronic)
ISSN-L
2046-1402
Statut éditorial
Publié
Date de publication
2020
Peer-reviewed
Oui
Volume
9
Pages
27
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: epublish
Résumé
The Orthologous Matrix (OMA) is a method and database that allows users to identify orthologs among many genomes. OMA provides three different types of orthologs: pairwise orthologs, OMA Groups and Hierarchical Orthologous Groups (HOGs). This Primer is organized in two parts. In the first part, we provide all the necessary background information to understand the concepts of orthology, how we infer them and the different subtypes of orthology in OMA, as well as what types of analyses they should be used for. In the second part, we describe protocols for using the OMA browser to find a specific gene and its various types of orthologs. By the end of the Primer, readers should be able to (i) understand homology and the different types of orthologs reported in OMA, (ii) understand the best type of orthologs to use for a particular analysis; (iii) find particular genes of interest in the OMA browser; and (iv) identify orthologs for a given gene. The data can be freely accessed from the OMA browser at https://omabrowser.org.
Mots-clé
Comparative genomics, Hierarchical orthologous groups, OMA, Orthologous Matrix, orthology, phylogenetics
Pubmed
Open Access
Oui
Création de la notice
23/01/2020 16:29
Dernière modification de la notice
15/01/2021 8:11
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