Epistasis and evolutionary dependencies in human cancers.
Détails
Télécharger: 1-s2.0-S0959437X22000983-main.pdf (890.55 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_87AEECFCDB0B
Type
Article: article d'un périodique ou d'un magazine.
Sous-type
Synthèse (review): revue aussi complète que possible des connaissances sur un sujet, rédigée à partir de l'analyse exhaustive des travaux publiés.
Collection
Publications
Institution
Titre
Epistasis and evolutionary dependencies in human cancers.
Périodique
Current opinion in genetics & development
ISSN
1879-0380 (Electronic)
ISSN-L
0959-437X
Statut éditorial
Publié
Date de publication
12/2022
Peer-reviewed
Oui
Volume
77
Pages
101989
Langue
anglais
Notes
Publication types: Journal Article ; Review
Publication Status: ppublish
Publication Status: ppublish
Résumé
Cancer evolution is driven by the concerted action of multiple molecular alterations, which emerge and are selected during tumor progression. An alteration is selected when it provides an advantage to the tumor cell. However, the advantage provided by a specific alteration depends on the tumor lineage, cell epigenetic state, and presence of additional alterations. In this case, we say that an evolutionary dependency exists between an alteration and what influences its selection. Epistatic interactions between altered genes lead to evolutionary dependencies (EDs), by favoring or vetoing specific combinations of events. Large-scale cancer genomics studies have discovered examples of such dependencies, and showed that they influence tumor progression, disease phenotypes, and therapeutic response. In the past decade, several algorithmic approaches have been proposed to infer EDs from large-scale genomics datasets. These methods adopt diverse strategies to address common challenges and shed new light on cancer evolutionary trajectories. Here, we review these efforts starting from a simple conceptualization of the problem, presenting the tackled and still unmet needs in the field, and discussing the implications of EDs in cancer biology and precision oncology.
Mots-clé
Humans, Epistasis, Genetic, Neoplasms/genetics, Precision Medicine, Genomics/methods, Phenotype
Pubmed
Web of science
Open Access
Oui
Création de la notice
11/10/2022 12:31
Dernière modification de la notice
19/07/2023 6:13