Signal search analysis server.
Détails
Etat: Public
Version: Final published version
Licence: Non spécifiée
It was possible to publish this article open access thanks to a Swiss National Licence with the publisher.
ID Serval
serval:BIB_74A486451481
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Signal search analysis server.
Périodique
Nucleic acids research
ISSN
1362-4962[electronic]
Statut éditorial
Publié
Date de publication
2003
Volume
31
Numéro
13
Pages
3618-20
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't - Publication Status: ppublish
Résumé
Signal search analysis is a general method to discover and characterize sequence motifs that are positionally correlated with a functional site (e.g. a transcription or translation start site). The method has played an instrumental role in the analysis of eukaryotic promoter elements. The signal search analysis server provides access to four different computer programs as well as to a large number of precompiled functional site collections. The programs offered allow: (i) the identification of non-random sequence regions under evolutionary constraint; (ii) the detection of consensus sequence-based motifs that are over- or under-represented at a particular distance from a functional site; (iii) the analysis of the positional distribution of a consensus sequence- or weight matrix-based sequence motif around a functional site; and (iv) the optimization of a weight matrix description of a locally over-represented sequence motif. These programs can be accessed at: http://www.isrec.isb-sib.ch/ssa/.
Mots-clé
Consensus Sequence, Genome, Bacterial, Internet, Promoter Regions, Genetic, Protein Biosynthesis, RNA, Ribosomal, 16S, Regulatory Sequences, Nucleic Acid, Response Elements, Sequence Analysis, DNA, Software, Transcription Initiation Site
Pubmed
Web of science
Open Access
Oui
Création de la notice
13/03/2008 11:35
Dernière modification de la notice
14/02/2022 8:55