A molecular spring for vision.

Détails

ID Serval
serval:BIB_5ED654591B81
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Titre
A molecular spring for vision.
Périodique
Journal of the American Chemical Society
Auteur⸱e⸱s
Röhrig U.F., Guidoni L., Laio A., Frank I., Rothlisberger U.
ISSN
0002-7863 (Print)
ISSN-L
0002-7863
Statut éditorial
Publié
Date de publication
2004
Peer-reviewed
Oui
Volume
126
Numéro
47
Pages
15328-15329
Langue
anglais
Résumé
Light absorption by the visual pigment rhodopsin leads to vision via a complex signal transduction pathway that is initiated by the ultrafast and highly efficient photoreaction of its chromophore, the retinal protonated Schiff base (RPSB). Here, we investigate this reaction in real time by means of unrestrained molecular dynamics simulations of the protein in a membrane mimetic environment, treating the chromophore at the density functional theory level. We demonstrate that a highly strained all-trans RPSB is formed starting from the 11-cis configuration (dark state) within approximately 100 fs by a minor rearrangement of the nuclei under preservation of the saltbridge with Glu113 and virtually no deformation of the binding pocket. Hence, the initial step of vision can be understood as the compression of a molecular spring by a minor change of the nuclear coordinates. This spring can then release its strain by altering the protein environment.
Mots-clé
Algorithms, Models, Molecular, Photochemistry, Protein Binding, Quantum Theory, Receptors, G-Protein-Coupled/chemistry, Receptors, G-Protein-Coupled/metabolism, Retinaldehyde/chemistry, Retinaldehyde/metabolism, Rhodopsin/chemistry, Rhodopsin/metabolism, Schiff Bases/chemistry, Schiff Bases/metabolism, Thermodynamics
Pubmed
Web of science
Création de la notice
30/10/2015 10:01
Dernière modification de la notice
20/08/2019 15:16
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