Assessing Antibiotics Biodegradation and Effects at Sub-inhibitory Concentrations by Quantitative Microbial Community Deconvolution

Détails

ID Serval
serval:BIB_4D5A579D7A32
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Assessing Antibiotics Biodegradation and Effects at Sub-inhibitory Concentrations by Quantitative Microbial Community Deconvolution
Périodique
Frontiers in Environmental Science
Auteur⸱e⸱s
Özel Duygan Birge D., Gaille Caroline, Fenner Kathrin, van der Meer Jan R.
ISSN
2296-665X
Statut éditorial
Publié
Date de publication
16/09/2021
Volume
9
Pages
737247
Langue
anglais
Résumé
Antibiotics in the environment cause widespread concern as a result of their potent inhibitory action on microbial growth and their role in potentially creating selective conditions for proliferation of antibiotic resistant bacteria. Comprising a carbon skeleton, antibiotics should be amenable to microbial biodegradation, but this is still largely uncharted territory because of their simultaneous strong toxicity. In this study, we estimated potential antibiotics degradation by and effects on mixed microbial communities at concentrations sufficiently high to allow sensitive detection of biomass growth, but simultaneously, low enough to mitigate their toxic action. We used three different mixed inoculum sources freshly derived from freshwater, activated sludge or soil, and tested a series of 15 antibiotics from different classes at 1 mg C-carbon l(-1) dosage. Consistent community growth was observed for freshwater and activated sludge with ampicillin, erythromycin and chloramphenicol, and with sulfomethoxazole for activated sludge, which was accompanied by parent compound disappearance. Community growth could be attributed to a few subclasses of recognized cell types by using supervised machine-learning-based classifiers. Most other tested antibiotics resulted in inhibition of community growth on background assimilable organic carbon, concomitant with altered composition of the resulting communities. We conclude that growth-linked biodegradation of antibiotics at low concentrations may be present among typical environmental microbiota, but for a selected subset only, whereas for the majority of antibiotics negative effects prevail without any sign of productive growth.
Mots-clé
antibiotics, biodegradation, microbial communities, flow cytometry, machine learning
Web of science
Open Access
Oui
Création de la notice
08/10/2021 18:17
Dernière modification de la notice
23/02/2022 7:36
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