crestr: an R package to perform probabilistic climate reconstructions from palaeoecological datasets

Détails

Ressource 1Télécharger: cp-18-821-2022.pdf (7212.72 [Ko])
Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_411352ABCDD5
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
crestr: an R package to perform probabilistic climate reconstructions from palaeoecological datasets
Périodique
Climate of the Past
Auteur⸱e⸱s
Chevalier Manuel
ISSN
1814-9332
Statut éditorial
Publié
Date de publication
19/04/2022
Peer-reviewed
Oui
Volume
18
Numéro
4
Pages
821-844
Langue
anglais
Résumé
Statistical climate reconstruction techniques are fundamental tools to study past climate variability from fos- sil proxy data. In particular, the methods based on probabil- ity density functions (or PDFs) can be used in various en- vironments and with different climate proxies because they rely on elementary calibration data (i.e. modern geolocalised presence data). However, the difficulty of accessing and cu- rating these calibration data and the complexity of inter- preting probabilistic results have often limited their use in palaeoclimatological studies. Here, I introduce a new R pack- age (crestr) to apply the PDF-based method CREST (Cli- mate REconstruction SofTware) on diverse palaeoecological datasets and address these problems. crestr includes a glob- ally curated calibration dataset for six common climate prox- ies (i.e. plants, beetles, chironomids, rodents, foraminifera, and dinoflagellate cysts) associated with an extensive range of climate variables (20 terrestrial and 19 marine variables) that enables its use in most terrestrial and marine environ- ments. Private data collections can also be used instead of, or in combination with, the provided calibration dataset. The package includes a suite of graphical diagnostic tools to rep- resent the data at each step of the reconstruction process and provide insights into the effect of the different modelling as- sumptions and external factors that underlie a reconstruction. With this R package, the CREST method can now be used in a scriptable environment and thus be more easily integrated with existing workflows. It is hoped that crestr will be used to produce the much-needed quantified climate reconstruc- tions from the many regions where they are currently lack- ing, despite the availability of suitable fossil records. To sup- port this development, the use of the package is illustrated with a step-by-step replication of a 790 000-year-long mean annual temperature reconstruction based on a pollen record from southeastern Africa.
Mots-clé
Paleontology, Stratigraphy, Global and Planetary Change
Web of science
Open Access
Oui
Création de la notice
16/05/2022 11:28
Dernière modification de la notice
28/02/2023 8:09
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