Single cell transcriptome in aneuploidies reveals mechanisms of gene dosage imbalance.

Détails

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Etat: Public
Version: Final published version
Licence: CC BY 4.0
ID Serval
serval:BIB_1AC470E44968
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
Single cell transcriptome in aneuploidies reveals mechanisms of gene dosage imbalance.
Périodique
Nature communications
Auteur⸱e⸱s
Stamoulis G., Garieri M., Makrythanasis P., Letourneau A., Guipponi M., Panousis N., Sloan-Béna F., Falconnet E., Ribaux P., Borel C., Santoni F., Antonarakis S.E.
ISSN
2041-1723 (Electronic)
ISSN-L
2041-1723
Statut éditorial
Publié
Date de publication
03/10/2019
Peer-reviewed
Oui
Volume
10
Numéro
1
Pages
4495
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
Publication Status: epublish
Résumé
Aneuploidy is a major source of gene dosage imbalance due to copy number alterations (CNA), and viable human trisomies are model disorders of altered gene expression. We study gene and allele-specific expression (ASE) of 9668 single-cell fibroblasts from trisomy 21 (T21) discordant twins and from mosaic T21, T18, T13 and T8. We examine 928 single cells with deep scRNAseq. Expected and observed overexpression of trisomic genes in trisomic vs. diploid bulk RNAseq is not detectable in trisomic vs. diploid single cells. Instead, for trisomic genes with low-to-average expression, their altered gene dosage is mainly due to the higher fraction of trisomic cells simultaneously expressing these genes, in agreement with a stochastic 2-state burst-like model of transcription. These results, confirmed in a further analysis of 8740 single fibroblasts with shallow scRNAseq, suggest that the specific transcriptional profile of each gene contributes to the phenotypic variability of trisomies. We propose an improved model to understand the effects of CNA and, generally, of gene regulation on gene dosage imbalance.
Mots-clé
Alleles, Chromosomes, Human, Pair 13/genetics, Chromosomes, Human, Pair 18/genetics, Chromosomes, Human, Pair 8/genetics, DNA Copy Number Variations, Down Syndrome/genetics, Female, Fibroblasts, Gene Dosage, Gene Expression Profiling, Humans, Male, Models, Genetic, Mosaicism, Phenotype, RNA-Seq, Single-Cell Analysis, Transcriptome/genetics, Trisomy/genetics
Pubmed
Web of science
Open Access
Oui
Création de la notice
13/10/2019 17:45
Dernière modification de la notice
30/04/2021 7:08
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