On estimation and identifiability issues of sex-linked inheritance with a case study of pigmentation in Swiss barn owl (Tyto alba)
Détails
Télécharger: BIB_152C15ECA0C2.P001.pdf (674.88 [Ko])
Etat: Public
Version: Final published version
Etat: Public
Version: Final published version
ID Serval
serval:BIB_152C15ECA0C2
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
On estimation and identifiability issues of sex-linked inheritance with a case study of pigmentation in Swiss barn owl (Tyto alba)
Périodique
Ecology and Evolution
ISSN
2045-7758
Statut éditorial
Publié
Date de publication
2014
Peer-reviewed
Oui
Volume
4
Numéro
9
Pages
1555-1566
Langue
anglais
Résumé
Genetic evaluation using animal models or pedigree-based models generally assume only autosomal inheritance. Bayesian animal models provide a flexible framework for genetic evaluation, and we show how the model readily can accommodate situations where the trait of interest is influenced by both autosomal and sex-linked inheritance. This allows for simultaneous calculation of autosomal and sex-chromosomal additive genetic effects. Inferences were performed using integrated nested Laplace approximations (INLA), a nonsampling-based Bayesian inference methodology. We provide a detailed description of how to calculate the inverse of the X- or Z-chromosomal additive genetic relationship matrix, needed for inference. The case study of eumelanic spot diameter in a Swiss barn owl (Tyto alba) population shows that this trait is substantially influenced by variation in genes on the Z-chromosome (sigma(2)(z) = 0.2719 and sigma(2)(a) = 0.4405). Further, a simulation study for this study system shows that the animal model accounting for both autosomal and sex-chromosome-linked inheritance is identifiable, that is, the two effects can be distinguished, and provides accurate inference on the variance components.
Mots-clé
Approximate Bayesian animal model, barn owl (Tyto alba), integrated nested Laplace approximation, quantitative genetics, sex chromosome, sex-linked additive genetic effects
Web of science
Open Access
Oui
Création de la notice
10/02/2014 22:19
Dernière modification de la notice
20/08/2019 12:44