Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

Détails

Ressource 1Télécharger: 28849660_BIB_13B3D8286B8A.pdf (2196.79 [Ko])
Etat: Public
Version: Final published version
Licence: Non spécifiée
ID Serval
serval:BIB_13B3D8286B8A
Type
Article: article d'un périodique ou d'un magazine.
Sous-type
Synthèse (review): revue aussi complète que possible des connaissances sur un sujet, rédigée à partir de l'analyse exhaustive des travaux publiés.
Collection
Publications
Institution
Titre
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.
Périodique
Journal of proteome research
Auteur⸱e⸱s
Deutsch E.W., Orchard S., Binz P.A., Bittremieux W., Eisenacher M., Hermjakob H., Kawano S., Lam H., Mayer G., Menschaert G., Perez-Riverol Y., Salek R.M., Tabb D.L., Tenzer S., Vizcaíno J.A., Walzer M., Jones A.R.
ISSN
1535-3907 (Electronic)
ISSN-L
1535-3893
Statut éditorial
Publié
Date de publication
01/12/2017
Peer-reviewed
Oui
Volume
16
Numéro
12
Pages
4288-4298
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: ppublish
Résumé
The Proteomics Standards Initiative (PSI) of the Human Proteome Organization (HUPO) has now been developing and promoting open community standards and software tools in the field of proteomics for 15 years. Under the guidance of the chair, cochairs, and other leadership positions, the PSI working groups are tasked with the development and maintenance of community standards via special workshops and ongoing work. Among the existing ratified standards, the PSI working groups continue to update PSI-MI XML, MITAB, mzML, mzIdentML, mzQuantML, mzTab, and the MIAPE (Minimum Information About a Proteomics Experiment) guidelines with the advance of new technologies and techniques. Furthermore, new standards are currently either in the final stages of completion (proBed and proBAM for proteogenomics results as well as PEFF) or in early stages of design (a spectral library standard format, a universal spectrum identifier, the qcML quality control format, and the Protein Expression Interface (PROXI) web services Application Programming Interface). In this work we review the current status of all of these aspects of the PSI, describe synergies with other efforts such as the ProteomeXchange Consortium, the Human Proteome Project, and the metabolomics community, and provide a look at future directions of the PSI.

Mots-clé
bioinformatics software, data standard, database, mass spectrometry, metabolomics, molecular interactions, protein identification, protein quantification, proteomics, quality control
Pubmed
Web of science
Open Access
Oui
Création de la notice
02/01/2018 16:38
Dernière modification de la notice
20/08/2019 12:42
Données d'usage