The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo.

Détails

ID Serval
serval:BIB_0BE59B59E0A3
Type
Article: article d'un périodique ou d'un magazine.
Collection
Publications
Institution
Titre
The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo.
Périodique
Journal of Molecular Biology
Auteur⸱e⸱s
Bednar J., Furrer P., Stasiak A., Dubochet J., Egelman E.H., Bates A.D.
ISSN
0022-2836[print], 0022-2836[linking]
Statut éditorial
Publié
Date de publication
01/1994
Volume
235
Numéro
3
Pages
825-847
Langue
anglais
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, U.S. Gov't, P.H.S.
Publication Status: ppublish
Résumé
A cryo-electron microscopy study of supercoiled DNA molecules freely suspended in cryo-vitrified buffer was combined with Monte Carlo simulations and gel electrophoretic analysis to investigate the role of intersegmental electrostatic repulsion in determining the shape of supercoiled DNA molecules. It is demonstrated here that a decrease of DNA-DNA repulsion by increasing concentrations of counterions causes a higher fraction of the linking number deficit to be partitioned into writhe. When counterions reach concentrations likely to be present under in vivo conditions, naturally supercoiled plasmids adopt a tightly interwound conformation. In these tightly supercoiled DNA molecules the opposing segments of interwound superhelix seem to directly contact each other. This form of supercoiling, where two DNA helices interact laterally, may represent an important functional state of DNA. In the particular case of supercoiled minicircles (178 bp) the delta Lk = -2 topoisomers undergo a sharp structural transition from almost planar circles in low salt buffers to strongly writhed "figure-eight" conformations in buffers containing neutralizing concentrations of counterions. Possible implications of this observed structural transition in DNA are discussed.
Mots-clé
DNA, Superhelical/chemistry, DNA, Superhelical/ultrastructure, Electrophoresis, Agar Gel, Escherichia coli, Magnesium/chemistry, Microscopy, Electron, Molecular Weight, Monte Carlo Method, Nucleic Acid Conformation, Plasmids, Sodium Chloride/chemistry, Thermodynamics
Pubmed
Web of science
Création de la notice
24/01/2008 11:25
Dernière modification de la notice
20/08/2019 13:33
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