High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs.

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Serval ID
serval:BIB_F6F681975AA9
Type
Autre: use this type when nothing else fits.
Collection
Publications
Institution
UNIL/CHUV
Title
High-throughput SARS-CoV-2 and host genome sequencing from single nasopharyngeal swabs.
Author(s)
Gorzynski J.E., De Jong H.N., Amar D., Hughes C.R., Ioannidis A., Bierman R., Liu D., Tanigawa Y., Kistler A., Kamm J., Kim J., Cappello L., Neff N.F., Rubinacci S., Delaneau O., Shoura M.J., Seo K., Kirillova A., Raja A., Sutton S., Huang C., Sahoo M.K., Mallempati K.C., Montero-Martin G., Osoegawa K., Jimenez-Morales D., Watson N., Hammond N., Joshi R., Fernandez-Vina M., Christle J.W., Wheeler M.T., Febbo P., Farh K., Schroth G., Desouza F., Palacios J., Salzman J., Pinsky B.A., Rivas M.A., Bustamante C.D., Ashley E.A., Parikh V.N.
Issued date
29/07/2020
Language
english
Abstract
During COVID19 and other viral pandemics, rapid generation of host and pathogen genomic data is critical to tracking infection and informing therapies. There is an urgent need for efficient approaches to this data generation at scale. We have developed a scalable, high throughput approach to generate high fidelity low pass whole genome and HLA sequencing, viral genomes, and representation of human transcriptome from single nasopharyngeal swabs of COVID19 patients.
OAI-PMH
oai:serval.unil.ch:BIB_F6F681975AA9
DOI
10.1101/2020.07.27.20163147
Pubmed
32766602
Create date
27/01/2021 10:01
Last modification date
13/04/2024 6:05
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