A GWAS sequence variant for platelet volume marks an alternative DNM3 promoter in megakaryocytes near a MEIS1 binding site.

Details

Serval ID
serval:BIB_E428740D062E
Type
Article: article from journal or magazin.
Collection
Publications
Title
A GWAS sequence variant for platelet volume marks an alternative DNM3 promoter in megakaryocytes near a MEIS1 binding site.
Journal
Blood
Author(s)
Nürnberg S.T., Rendon A., Smethurst P.A., Paul D.S., Voss K., Thon J.N., Lloyd-Jones H., Sambrook J.G., Tijssen M.R., Italiano J.E., Deloukas P., Gottgens B., Soranzo N., Ouwehand W.H.
Working group(s)
HaemGen Consortium
Contributor(s)
Gieger C., Radhakrishnan A., Cvejic A., Tang W., Porcu E., Pistis G., Serbanovic-Canic J., Elling U., Goodall A.H., Labrune Y., Lopez L.M., Mägi R., Meacham S., Okada Y., Pirastu N., Sorice R., Teumer A., Voss K., Zhang W., Ramirez-Solis R., Bis J.C., Ellinghaus D., Gögele M., Hottenga J.J., Langenberg C., Kovacs P., F P., Shin S.Y., Esko T., Hartiala J., Kanoni S., Murgia F., Parsa A., Stephens J., van der Harst P., van der Schoot C., Allayee H., Attwood A., Balkau B., Bastardot F., Basu S., Baumeister S.E., Biino G., Bomba L., Bonnefond A., Cambien F., Chambers J.C., Cucca F., D' Adamo P., Davies G., de Geus E.J., de Boer R.A., Döring A., Elliott P., Erdmann J., Feng W., Evans D.M., Falchi M., Folsom A.R., Frazer I.H., Gibson Q.D., Glazer N.L., Hammond C., Hartikainen A.L., Heckbert S.R., Hengstenberg C., Hersch M., Illig T., Loos R.J., Jolley J., Khaw K.T., Kühnel B., Kyrtsonis M.C., Lagou V., Lloyd-Jones H., Lumley T., Mangino M., Maschio A., Mateo Leach I., McKnight B., Memari Y., Mitchell B.D., Montgomery G.W., Nöthlings U., Nakamura Y., Nauck M., Navis G., Nolte I.M., Porteous D.J., Pouta A., Pramstaller P.P., Pullat J., Ring S.M., Rotter J.I., Ruggiero D., Ruokonen A., Sala C., Samani N.J., Sambrook J., Schlessinger D., Schreiber S., Schunkert H., Scott J., Smith N.L., Snieder H., Starr J.M., Stumvoll M., Takahashi A., Tang W., Taylor K., Tenesa A., Thein S.L., Tönjes A., Uda M., Ulivi S., Wichmann H.E., Yang T.P., van Veldhuisen D.J., Visscher P.M., Völker U., Wiggins K.L., Willemsen G., Zhao J.H., Zitting P., Bradley J.R., Dedoussis G.V., Gasparini P., Hazen S.L., Metspalu A., Pirastu M., Shuldiner A.R., van Pelt L., Zwaginga J.J., Boomsma D.I., Deary I.J., Franke A., Froguel P., Ganesh S.K., Jarvelin M.R., Martin N.G., Meisinger C., Psaty B.M., Spector T.D., Wareham N.J., Akkerman J.W., Ciullo M., Deloukas P., Greinacher A., Jupe S., Kamatani N., Khadake J., Kooner J.S., Penninger J., Prokopenko I., Stemple D., Toniolo D., Wernisch L., Sanna S., Hicks A.A., Rendon A., Ferreira M.A., Ouwehand W.H., Soranzo N.
ISSN
1528-0020 (Electronic)
ISSN-L
0006-4971
Publication state
Published
Issued date
06/12/2012
Peer-reviewed
Oui
Volume
120
Number
24
Pages
4859-4868
Language
english
Notes
Publication types: Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
We recently identified 68 genomic loci where common sequence variants are associated with platelet count and volume. Platelets are formed in the bone marrow by megakaryocytes, which are derived from hematopoietic stem cells by a process mainly controlled by transcription factors. The homeobox transcription factor MEIS1 is uniquely transcribed in megakaryocytes and not in the other lineage-committed blood cells. By ChIP-seq, we show that 5 of the 68 loci pinpoint a MEIS1 binding event within a group of 252 MK-overexpressed genes. In one such locus in DNM3, regulating platelet volume, the MEIS1 binding site falls within a region acting as an alternative promoter that is solely used in megakaryocytes, where allelic variation dictates different levels of a shorter transcript. The importance of dynamin activity to the latter stages of thrombopoiesis was confirmed by the observation that the inhibitor Dynasore reduced murine proplatelet for-mation in vitro.
Keywords
Animals, Binding Sites/genetics, Blood Platelets/drug effects, Blood Platelets/metabolism, Cell Line, Tumor, Cell Lineage/genetics, Cells, Cultured, Chromatin Immunoprecipitation, Dynamin III/genetics, Gene Expression, Genetic Variation, Genome, Human/genetics, Homeodomain Proteins/genetics, Homeodomain Proteins/metabolism, Humans, Hydrazones/pharmacology, Megakaryocytes/metabolism, Mice, Myeloid Ecotropic Viral Integration Site 1 Protein, Neoplasm Proteins/genetics, Neoplasm Proteins/metabolism, Platelet Count, Polymorphism, Single Nucleotide, Promoter Regions, Genetic/genetics, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Transcription Initiation Site, Transcription, Genetic
Pubmed
Web of science
Create date
18/01/2021 21:47
Last modification date
19/01/2021 6:26
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