The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties.
Details
Serval ID
serval:BIB_D5BE93CEBFEA
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties.
Journal
Journal of Bacteriology
ISSN
0021-9193[print], 0021-9193[linking]
Publication state
Published
Issued date
2006
Volume
188
Number
5
Pages
1999-2013
Language
english
Abstract
Pseudomonas sp. strain B13 is a bacterium known to degrade chloroaromatic compounds. The properties to use 3- and 4-chlorocatechol are determined by a self-transferable DNA element, the clc element, which normally resides at two locations in the cell's chromosome. Here we report the complete nucleotide sequence of the clc element, demonstrating the unique catabolic properties while showing its relatedness to genomic islands and integrative and conjugative elements rather than to other known catabolic plasmids. As far as catabolic functions, the clc element harbored, in addition to the genes for chlorocatechol degradation, a complete functional operon for 2-aminophenol degradation and genes for a putative aromatic compound transport protein and for a multicomponent aromatic ring dioxygenase similar to anthranilate hydroxylase. The genes for catabolic functions were inducible under various conditions, suggesting a network of catabolic pathway induction. For about half of the open reading frames (ORFs) on the clc element, no clear functional prediction could be given, although some indications were found for functions that were similar to plasmid conjugation. The region in which these ORFs were situated displayed a high overall conservation of nucleotide sequence and gene order to genomic regions in other recently completed bacterial genomes or to other genomic islands. Most notably, except for two discrete regions, the clc element was almost 100% identical over the whole length to a chromosomal region in Burkholderia xenovorans LB400. This indicates the dynamic evolution of this type of element and the continued transition between elements with a more pathogenic character and those with catabolic properties.
Keywords
Aminophenols/metabolism, Bacterial Proteins/genetics, Bacterial Proteins/metabolism, Catechols/metabolism, Dioxygenases/genetics, Genomic Islands/physiology, Molecular Sequence Data, Pseudomonas/genetics, Pseudomonas/physiology
Pubmed
Web of science
Open Access
Yes
Create date
21/01/2008 13:36
Last modification date
20/08/2019 15:55