An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma.
Details
Serval ID
serval:BIB_B4DE50DE25BB
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma.
Journal
Cell
ISSN
1097-4172 (Electronic)
ISSN-L
0092-8674
Publication state
Published
Issued date
08/08/2019
Peer-reviewed
Oui
Volume
178
Number
4
Pages
835-849.e21
Language
english
Notes
Publication types: Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Publication Status: ppublish
Abstract
Diverse genetic, epigenetic, and developmental programs drive glioblastoma, an incurable and poorly understood tumor, but their precise characterization remains challenging. Here, we use an integrative approach spanning single-cell RNA-sequencing of 28 tumors, bulk genetic and expression analysis of 401 specimens from the The Cancer Genome Atlas (TCGA), functional approaches, and single-cell lineage tracing to derive a unified model of cellular states and genetic diversity in glioblastoma. We find that malignant cells in glioblastoma exist in four main cellular states that recapitulate distinct neural cell types, are influenced by the tumor microenvironment, and exhibit plasticity. The relative frequency of cells in each state varies between glioblastoma samples and is influenced by copy number amplifications of the CDK4, EGFR, and PDGFRA loci and by mutations in the NF1 locus, which each favor a defined state. Our work provides a blueprint for glioblastoma, integrating the malignant cell programs, their plasticity, and their modulation by genetic drivers.
Keywords
Adolescent, Aged, Animals, Brain Neoplasms/genetics, Brain Neoplasms/pathology, Cell Line, Tumor, Cell Lineage/genetics, Cell Plasticity/genetics, Child, Cohort Studies, Disease Models, Animal, Female, Genetic Heterogeneity, Glioblastoma/genetics, Glioblastoma/pathology, Heterografts, Humans, Infant, Male, Mice, Mice, Inbred C57BL, Mice, Inbred NOD, Middle Aged, Mutation, RNA-Seq, Single-Cell Analysis/methods, Tumor Microenvironment/genetics, CDK4, EGFR, NF1, PDGFRA, glioblastoma IDH-wildtype, glioblastoma stem cells, glioblastoma subtypes, lineage tracing, single-cell RNA-sequencing
Pubmed
Web of science
Create date
23/07/2019 11:53
Last modification date
19/06/2020 5:21