One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.

Details

Serval ID
serval:BIB_A168E290C027
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
Journal
Molecular Biology and Evolution
Author(s)
Amoutzias G.D., Veron A.S., Weiner J., Robinson-Rechavi M., Bornberg-Bauer E., Oliver S.G., Robertson D.L.
ISSN
0737-4038 (Print)
ISSN-L
0737-4038
Publication state
Published
Issued date
2007
Volume
24
Number
3
Pages
827-835
Language
english
Abstract
The genomic era has revealed that the large repertoire of observed animal phenotypes is dependent on changes in the expression patterns of a finite number of genes, which are mediated by a plethora of transcription factors (TFs) with distinct specificities. The dimerization of TFs can also increase the complexity of a genetic regulatory network manifold, by combining a small number of monomers into dimers with distinct functions. Therefore, studying the evolution of these dimerizing TFs is vital for understanding how complexity increased during animal evolution. We focus on the second largest family of dimerizing TFs, the basic-region leucine zipper (bZIP), and infer when it expanded and how bZIP DNA-binding and dimerization functions evolved during the major phases of animal evolution. Specifically, we classify the metazoan bZIPs into 19 families and confirm the ancient nature of at least 13 of these families, predating the split of the cnidaria. We observe fixation of a core dimerization network in the last common ancestor of protostomes-deuterostomes. This was followed by an expansion of the number of proteins in the network, but no major dimerization changes in interaction partners, during the emergence of vertebrates. In conclusion, the bZIPs are an excellent model with which to understand how DNA binding and protein interactions of TFs evolved during animal evolution.
Keywords
Animals, Basic-Leucine Zipper Transcription Factors/classification, Basic-Leucine Zipper Transcription Factors/genetics, Binding Sites/genetics, Cluster Analysis, Computational Biology, Conserved Sequence/genetics, Dimerization, Evolution, Molecular, Humans, Likelihood Functions, Models, Genetic, Phylogeny
Pubmed
Web of science
Open Access
Yes
Create date
24/01/2008 17:47
Last modification date
20/08/2019 15:07
Usage data