The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.

Walker, K.; Kalra, D.; Lowdon, R.; Chen, G.; Molik, D.; Soto, D.C.; Dabbaghie, F.; Khleifat, A.A.; Mahmoud, M.; Paulin, L.F.; Raza, M.S.; Pfeifer, S.P.; Agustinho, D.P.; Aliyev, E.; Avdeyev, P.; Barrozo, E.R.; Behera, S.; Billingsley, K.; Chong, L.C.; Choubey, D.; De Coster, W.; Fu, Y.; Gener, A.R.; Hefferon, T.; Henke, D.M.; Höps, W.; Illarionova, A.; Jochum, M.D.; Jose, M.; Kesharwani, R.K.; Kolora, SRR; Kubica, J.; Lakra, P.; Lattimer, D.; Liew, C.S.; Lo, B.W.; Lo, C.; Lötter, A.; Majidian, S.; Mendem, S.K.; Mondal, R.; Ohmiya, H.; Parvin, N.; Peralta, C.; Poon, C.L.; Prabhakaran, R.; Saitou, M.; Sammi, A.; Sanio, P.; Sapoval, N.; Syed, N.; Treangen, T.; Wang, G.; Xu, T.; Yang, J.; Zhang, S.; Zhou, W.; Sedlazeck, F.J.; Busby, B.

doi:10.12688/f1000research.110194.1

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.

Details

Download: 36262335_BIB_96ED1132ABD0.pdf (6035.38 [Ko])
State: Public
Version: Final published version
License: CC BY 4.0

Serval ID

serval:BIB_96ED1132ABD0

Type

Article: article from journal or magazin.

Collection

Publications

Institution

UNIL/CHUV

Title

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.

Journal

F1000Research

Author(s)

Walker K., Kalra D., Lowdon R., Chen G., Molik D., Soto D.C., Dabbaghie F., Khleifat A.A., Mahmoud M., Paulin L.F., Raza M.S., Pfeifer S.P., Agustinho D.P., Aliyev E., Avdeyev P., Barrozo E.R., Behera S., Billingsley K., Chong L.C., Choubey D., De Coster W., Fu Y., Gener A.R., Hefferon T., Henke D.M., Höps W., Illarionova A., Jochum M.D., Jose M., Kesharwani R.K., Kolora SRR, Kubica J., Lakra P., Lattimer D., Liew C.S., Lo B.W., Lo C., Lötter A., Majidian S., Mendem S.K., Mondal R., Ohmiya H., Parvin N., Peralta C., Poon C.L., Prabhakaran R., Saitou M., Sammi A., Sanio P., Sapoval N., Syed N., Treangen T., Wang G., Xu T., Yang J., Zhang S., Zhou W., Sedlazeck F.J., Busby B.

ISSN

2046-1402 (Electronic)

ISSN-L

2046-1402

Publication state

Published

Issued date

2022

Peer-reviewed

Oui

Volume

Pages

530

Language

english

Notes

Publication types: Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, N.I.H., Intramural ; Research Support, U.S. Gov't, P.H.S.
Publication Status: epublish

Abstract

In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.

Keywords

Humans, SARS-CoV-2/genetics, COVID-19, Genomics, Software, Cancer, Covid-19, Hackathon, Long-reads, NGS, Structural variants, Tomatoes, Viral integration, k-mer

URN

urn:nbn:ch:serval-BIB_96ED1132ABD02

OAI-PMH

oai:serval.unil.ch:BIB_96ED1132ABD0

DOI

10.12688/f1000research.110194.1

Pubmed

36262335

Open Access

Yes

Create date

02/11/2022 9:19