Combined single-cell transcriptional, translational, and genomic profiling reveals HIV-1 reservoir diversity.

Details

Serval ID
serval:BIB_90A0673243D6
Type
Article: article from journal or magazin.
Collection
Publications
Title
Combined single-cell transcriptional, translational, and genomic profiling reveals HIV-1 reservoir diversity.
Journal
Cell reports
Author(s)
Sannier G., Dubé M., Dufour C., Richard C., Brassard N., Delgado G.G., Pagliuzza A., Baxter A.E., Niessl J., Brunet-Ratnasingham E., Charlebois R., Routy B., Routy J.P., Fromentin R., Chomont N., Kaufmann D.E.
ISSN
2211-1247 (Electronic)
Publication state
Published
Issued date
31/08/2021
Peer-reviewed
Oui
Volume
36
Number
9
Pages
109643
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
Although understanding the diversity of HIV-1 reservoirs is key to achieving a cure, their study at the single-cell level in primary samples remains challenging. We combine flow cytometric multiplexed fluorescent in situ RNA hybridization for different viral genes with HIV-1 p24 protein detection, cell phenotyping, and downstream near-full-length single-cell vDNA sequencing. Stimulation-induced viral RNA-positive (vRNA <sup>+</sup> ) cells from viremic and antiretroviral-therapy (ART)-suppressed individuals differ in their ability to produce p24. In participants on ART, latency-reversing agents (LRAs) induce a wide variety of viral gene transcription and translation patterns with LRA class-specific differences in reactivation potency. Reactivated proviruses, including in p24 <sup>+</sup> cells, are mostly defective. Although LRAs efficiently induce transcription in all memory cell subsets, we observe induction of translation mostly in effector memory cells, rather than in the long-lived central memory pool. We identify HIV-1 clones with diverse transcriptional and translational patterns between individual cells, and this finding suggests that cell-intrinsic factors influence reservoir persistence and heterogeneity.
Keywords
Adult, Aged, Anti-HIV Agents/therapeutic use, Case-Control Studies, Cell Line, Female, Flow Cytometry, Gene Expression Profiling, Gene Expression Regulation, Viral, HIV Core Protein p24/biosynthesis, HIV Core Protein p24/genetics, HIV Infections/blood, HIV Infections/drug therapy, HIV Infections/virology, HIV Long-Term Survivors, HIV-1/drug effects, HIV-1/genetics, HIV-1/metabolism, Human Immunodeficiency Virus Proteins/biosynthesis, Human Immunodeficiency Virus Proteins/genetics, Humans, In Situ Hybridization, Fluorescence, Leukocytes, Mononuclear/drug effects, Leukocytes, Mononuclear/metabolism, Leukocytes, Mononuclear/virology, Male, Middle Aged, Protein Biosynthesis/drug effects, RNA, Viral/biosynthesis, RNA, Viral/genetics, Single-Cell Analysis, Transcription, Genetic/drug effects, Transcriptome, Virus Activation, Young Adult, CD4 T cells, HIV-1, latency-reversing agents, multiparameter flow cytometry, multiplexed fluorescent in situ RNA hybridization, single-cell analysis, viral reservoirs, viral sequencing, viral transcription, viral translation
Pubmed
Web of science
Open Access
Yes
Create date
09/05/2023 12:59
Last modification date
29/11/2024 17:01
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