The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Neves, A.; Walther, D.; Martin-Campos, T.; Barbie, V.; Bertelli, C.; Blanc, D.; Bouchet, G.; Erard, F.; Greub, G.; Hirsch, H.H.; Huber, M.; Kaiser, L.; Leib, S.L.; Leuzinger, K.; Lazarevic, V.; Mäusezahl, M.; Molina, J.; Neher, R.A.; Perreten, V.; Ramette, A.; Roloff, T.; Schrenzel, J.; Seth-Smith, HMB; Stephan, R.; Terumalai, D.; Wegner, F.; Egli, A.

doi:10.1099/mgen.0.001001

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Details

Download: Neves_2023_MicroGenom_SPSP towards a nation-wide data exchange platform for bacterial viral and fungal genomics.pdf (2979.74 [Ko])
State: Public
Version: Final published version
License: CC BY 4.0

Serval ID

serval:BIB_7F921402DD4E

Type

Article: article from journal or magazin.

Publication sub-type

Review (review): journal as complete as possible of one specific subject, written based on exhaustive analyses from published work.

Collection

Publications

Institution

UNIL/CHUV

Title

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Journal

Microbial genomics

Author(s)

Neves A., Walther D., Martin-Campos T., Barbie V., Bertelli C., Blanc D., Bouchet G., Erard F., Greub G., Hirsch H.H., Huber M., Kaiser L., Leib S.L., Leuzinger K., Lazarevic V., Mäusezahl M., Molina J., Neher R.A., Perreten V., Ramette A., Roloff T., Schrenzel J., Seth-Smith HMB, Stephan R., Terumalai D., Wegner F., Egli A.

ISSN

2057-5858 (Electronic)

ISSN-L

2057-5858

Publication state

Published

Issued date

05/2023

Peer-reviewed

Oui

Volume

Number

Language

english

Notes

Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish

Abstract

The Swiss Pathogen Surveillance Platform (SPSP) is a shared secure surveillance platform between human and veterinary medicine, to also include environmental and foodborne isolates. It enables rapid and detailed transmission monitoring and outbreak surveillance of pathogens using whole genome sequencing data and associated metadata. It features controlled data access, complex dynamic queries, dedicated dashboards and automated data sharing with international repositories, providing actionable results for public health and the vision to improve societal well-being and health.

Keywords

Humans, Switzerland/epidemiology, Genome, Bacterial, Metadata, One Health, Genomics/methods, antibiotic resistance, bacteria, bioinformatics, database, epidemiology, fungi, molecular surveillance, outbreaks, research, sequencing, typing, virulence, virus

URN

urn:nbn:ch:serval-BIB_7F921402DD4E6

OAI-PMH

oai:serval.unil.ch:BIB_7F921402DD4E

DOI

10.1099/mgen.0.001001

Pubmed

37171846

Web of science

001041805100009

Open Access

Yes