Genetic features and genomic targets of human KRAB-zinc finger proteins.

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Version: Final published version
License: CC BY 4.0
Serval ID
serval:BIB_41F4935182BD
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Genetic features and genomic targets of human KRAB-zinc finger proteins.
Journal
Genome research
Author(s)
de Tribolet-Hardy J., Thorball C.W., Forey R., Planet E., Duc J., Coudray A., Khubieh B., Offner S., Pulver C., Fellay J., Imbeault M., Turelli P., Trono D.
ISSN
1549-5469 (Electronic)
ISSN-L
1088-9051
Publication state
Published
Issued date
08/2023
Peer-reviewed
Oui
Volume
33
Number
8
Pages
1409-1423
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
Krüppel-associated box (KRAB) domain-containing zinc finger proteins (KZFPs) are one of the largest groups of transcription factors encoded by tetrapods, with 378 members in human alone. KZFP genes are often grouped in clusters reflecting amplification by gene and segment duplication since the gene family first emerged more than 400 million years ago. Previous work has revealed that many KZFPs recognize transposable element (TE)-embedded sequences as genomic targets, and that KZFPs facilitate the co-option of the regulatory potential of TEs for the benefit of the host. Here, we present a comprehensive survey of the genetic features and genomic targets of human KZFPs, notably completing past analyses by adding data on close to a hundred family members. General principles emerge from our study of the TE-KZFP regulatory system, which point to multipronged evolutionary mechanisms underlaid by highly complex and combinatorial modes of action with strong influences on human speciation.
Keywords
Humans, Zinc Fingers/genetics, Transcription Factors/genetics, Biological Evolution, DNA Transposable Elements/genetics, Genomics
Pubmed
Web of science
Open Access
Yes
Create date
25/09/2023 16:33
Last modification date
08/08/2024 6:32
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