From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator.
Details
Download: Park2024.pdf (4250.67 [Ko])
State: Public
Version: Final published version
License: CC BY-NC-ND 4.0
State: Public
Version: Final published version
License: CC BY-NC-ND 4.0
Serval ID
serval:BIB_31414E598D6E
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
From resonance to chaos by modulating spatiotemporal patterns through a synthetic optogenetic oscillator.
Journal
Nature communications
ISSN
2041-1723 (Electronic)
ISSN-L
2041-1723
Publication state
Published
Issued date
23/08/2024
Peer-reviewed
Oui
Volume
15
Number
1
Pages
7284
Language
english
Notes
Publication types: Journal Article
Publication Status: epublish
Publication Status: epublish
Abstract
Oscillations are a recurrent phenomenon in biological systems across scales, but deciphering their fundamental principles is very challenging. Here, we tackle this challenge by redesigning the wellcharacterised synthetic oscillator known as "repressilator" in Escherichia coli and controlling it using optogenetics, creating the "optoscillator". Bacterial colonies manifest oscillations as spatial ring patterns. When we apply periodic light pulses, the optoscillator behaves as a forced oscillator and we systematically investigate the properties of the rings under various light conditions. Combining experiments with mathematical modeling, we demonstrate that this simple oscillatory circuit can generate complex dynamics that are transformed into distinct spatial patterns. We report the observation of synchronisation, resonance, subharmonic resonance and period doubling. Furthermore, we present evidence of a chaotic regime. This work highlights the intricate spatiotemporal patterns accessible by synthetic oscillators and underscores the potential of our approach in revealing fundamental principles of biological oscillations.
Keywords
Optogenetics/methods, Escherichia coli/genetics, Biological Clocks, Light, Nonlinear Dynamics, Models, Theoretical
Pubmed
Web of science
Open Access
Yes
Create date
30/08/2024 15:38
Last modification date
31/10/2024 7:13