The InterPro Database, 2003 brings increased coverage and new features.

Mulder, N.J.; Apweiler, R.; Attwood, T.K.; Bairoch, A.; Barrell, D.; Bateman, A.; Binns, D.; Biswas, M.; Bradley, P.; Bork, P.; Bucher, P.; Copley, R.R.; Courcelle, E.; Das, U.; Durbin, R.; Falquet, L.; Fleischmann, W.; Griffiths-Jones, S.; Haft, D.; Harte, N.; Hulo, N.; Kahn, D.; Kanapin, A.; Krestyaninova, M.; Lopez, R.; Letunic, I.; Lonsdale, D.; Silventoinen, V.; Orchard, S.E.; Pagni, M.; Peyruc, D.; Ponting, C.P.; Selengut, J.D.; Servant, F.; Sigrist, C.J.; Vaughan, R.; Zdobnov, E.M.

doi:10.1093/nar/gkg046

The InterPro Database, 2003 brings increased coverage and new features.

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Serval ID

serval:BIB_28509

Type

Article: article from journal or magazin.

Collection

Publications

Institution

UNIL/CHUV

Title

The InterPro Database, 2003 brings increased coverage and new features.

Journal

Nucleic acids research

Author(s)

Mulder N.J., Apweiler R., Attwood T.K., Bairoch A., Barrell D., Bateman A., Binns D., Biswas M., Bradley P., Bork P., Bucher P., Copley R.R., Courcelle E., Das U., Durbin R., Falquet L., Fleischmann W., Griffiths-Jones S., Haft D., Harte N., Hulo N., Kahn D., Kanapin A., Krestyaninova M., Lopez R., Letunic I., Lonsdale D., Silventoinen V., Orchard S.E., Pagni M., Peyruc D., Ponting C.P., Selengut J.D., Servant F., Sigrist C.J., Vaughan R., Zdobnov E.M.

ISSN

1362-4962[electronic]

Publication state

Published

Issued date

2003

Volume

Number

Pages

315-8

Language

english

Notes

Publication types: Journal Article ; Research Support, Non-U.S. Gov't - Publication Status: ppublish

Abstract

InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive resource. PROSITE, Pfam, PRINTS, ProDom, SMART and TIGRFAMs have been manually integrated and curated and are available in InterPro for text- and sequence-based searching. The results are provided in a single format that rationalises the results that would be obtained by searching the member databases individually. The latest release of InterPro contains 5629 entries describing 4280 families, 1239 domains, 95 repeats and 15 post-translational modifications. Currently, the combined signatures in InterPro cover more than 74% of all proteins in SWISS-PROT and TrEMBL, an increase of nearly 15% since the inception of InterPro. New features of the database include improved searching capabilities and enhanced graphical user interfaces for visualisation of the data. The database is available via a webserver (http://www.ebi.ac.uk/interpro) and anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro).

Keywords

Animals, Computer Graphics, Databases, Protein, Protein Processing, Post-Translational, Protein Structure, Tertiary, Proteins, Repetitive Sequences, Amino Acid, User-Computer Interface

OAI-PMH

oai:serval.unil.ch:BIB_28509

DOI

10.1093/nar/gkg046

Pubmed

12520011

Web of science

000181079700075

Open Access

Yes

Create date

19/11/2007 13:25