Complete genomic nucleotide sequence of the temperate bacteriophage Aa Phi 23 of Actinobacillus actinomycetemcomitans.
Details
Serval ID
serval:BIB_1B7E3FEDECA4
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
Complete genomic nucleotide sequence of the temperate bacteriophage Aa Phi 23 of Actinobacillus actinomycetemcomitans.
Journal
Journal of Bacteriology
ISSN
0021-9193 (Print)
ISSN-L
0021-9193
Publication state
Published
Issued date
2004
Peer-reviewed
Oui
Volume
186
Number
16
Pages
5523-5528
Language
english
Abstract
The entire double-stranded DNA genome of the Actinobacillus actinomycetemcomitans bacteriophage Aa Phi 23 was sequenced. Linear DNA contained in the phage particles is circularly permuted and terminally redundant. Therefore, the physical map of the phage genome is circular. Its size is 43,033 bp with an overall molar G+C content of 42.5 mol%. Sixty-six potential open reading frames (ORFs) were identified, including an ORF resulting from a translational frameshift. A putative function could be assigned to 23 of them. Twenty-three other ORFs share homologies only with hypothetical proteins present in several bacteria or bacteriophages, and 20 ORFs seem to be specific for phage Aa Phi 23. The organization of the phage genome and several genetic functions share extensive similarities to that of the lambdoid phages. However, Aa Phi 23 encodes a DNA adenine methylase, and the DNA packaging strategy is more closely related to the P22 system. The attachment sites of Aa Phi 23 (attP) and several A. actinomycetemcomitans hosts (attB) are 49 bp long.
Keywords
Aggregatibacter actinomycetemcomitans/virology, Bacteriophage P22/genetics, Bacteriophage P22/physiology, Base Composition, Base Sequence, DNA Packaging/genetics, DNA, Viral/chemistry, Frameshifting, Ribosomal, Genes, Bacterial, Genes, Viral, Genome, Viral, Molecular Sequence Data, Myoviridae/chemistry, Myoviridae/genetics, Open Reading Frames, Sequence Analysis, DNA, Sequence Homology, Siphoviridae/genetics, Siphoviridae/physiology, Site-Specific DNA-Methyltransferase (Adenine-Specific)/genetics
Pubmed
Web of science
Open Access
Yes
Create date
17/02/2017 8:58
Last modification date
20/08/2019 12:52