SPICA: Swiss portal for immune cell analysis.

Details

Serval ID
serval:BIB_1425D341196A
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
SPICA: Swiss portal for immune cell analysis.
Journal
Nucleic acids research
Author(s)
Andreatta M., David FPA, Iseli C., Guex N., Carmona S.J.
ISSN
1362-4962 (Electronic)
ISSN-L
0305-1048
Publication state
Published
Issued date
07/01/2022
Peer-reviewed
Oui
Volume
50
Number
D1
Pages
D1109-D1114
Language
english
Notes
Publication types: Journal Article ; Research Support, Non-U.S. Gov't
Publication Status: ppublish
Abstract
Single-cell transcriptomics allows the study of immune cell heterogeneity at an unprecedented level of resolution. The Swiss portal for immune cell analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells. In contrast to other single-cell databases, SPICA hosts curated, cell type-specific reference atlases that describe immune cell states at high resolution, and published single-cell datasets analysed in the context of these atlases. Additionally, users can privately analyse their own data in the context of existing atlases and contribute to the SPICA database. SPICA is available at https://spica.unil.ch.
Keywords
Databases, Genetic, Gene Expression Regulation/genetics, Humans, RNA-Seq/methods, Single-Cell Analysis/methods, Transcriptome/genetics, Transcriptome/immunology
Pubmed
Web of science
Open Access
Yes
Funding(s)
Swiss National Science Foundation / 180010
Create date
11/11/2021 15:30
Last modification date
23/04/2022 6:35
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